STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ70986.1Two-component system, NarL family, sensor histidine kinase BarA. (926 aa)    
Predicted Functional Partners:
SEI74910.1
Signal transduction histidine kinase.
 
0.999
SEJ20300.1
PAS domain S-box-containing protein.
 
0.999
SEJ20378.1
MASE1 protein.
 
 0.999
SEJ20405.1
PAS domain S-box-containing protein.
 
0.999
SEJ42732.1
PAS domain S-box-containing protein.
 
0.999
SEJ47658.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.999
SEJ49218.1
PAS domain S-box-containing protein.
 
0.999
SEJ49284.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
0.999
SEJ59559.1
PAS domain S-box-containing protein.
 
0.999
SEJ59586.1
PAS domain S-box-containing protein.
0.999
Your Current Organism:
Pseudomonas linyingensis
NCBI taxonomy Id: 915471
Other names: CGMCC 1.10701, LMG 25967, LMG:25967, P. linyingensis, Pseudomonas linyingensis He et al. 2015, Pseudomonas sp. LYBRD3-7, strain LYBRD3-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.