STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ79464.1Predicted Fe-Mo cluster-binding protein, NifX family. (132 aa)    
Predicted Functional Partners:
SEJ79484.1
Nitrogen fixation protein NifX.
 
     0.841
SEJ79429.1
Nitrogen fixation protein NifX.
 
     0.812
SEJ79499.1
Hypothetical protein; Belongs to the UPF0125 (RnfH) family.
 
    0.769
SEJ79449.1
Hypothetical protein.
       0.714
rnfD
Electron transport complex protein RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
  
    0.687
rnfE
Electron transport complex protein RnfE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.683
rnfC
Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
  
    0.682
rnfG
Electron transport complex protein RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
  
    0.665
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
    0.636
SEJ78931.1
Rop-like.
 
   
 0.567
Your Current Organism:
Pseudomonas linyingensis
NCBI taxonomy Id: 915471
Other names: CGMCC 1.10701, LMG 25967, LMG:25967, P. linyingensis, Pseudomonas linyingensis He et al. 2015, Pseudomonas sp. LYBRD3-7, strain LYBRD3-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.