Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MFGE8Lactadherin isoform X1. (530 aa)    
Predicted Functional Partners:
ITGAV
Integrin alpha V.
    
 0.936
NUP214
Nuclear pore complex protein Nup214 isoform X1.
    
 0.558
ITGB5
Integrin beta 5.
    
 0.550
PRDM5
PR domain zinc finger protein 5 isoform X2.
    
 
 0.536
NUP98
Nuclear pore complex protein Nup98-Nup96-like.
    
 0.524
NUP43
Nuclear pore complex protein Nup43.
    
 0.519
AAAS
Aladin isoform X1.
    
 0.505
NUP88
Nuclear pore complex protein Nup88.
    
 0.498
NUP93
Nuclear pore complex protein Nup93 isoform X1.
    
 0.485
RANBP2
E3 SUMO-protein ligase RanBP2 isoform X1.
   
  0.477
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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