STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NUP54Nuclear pore complex protein Nup54. (560 aa)    
Predicted Functional Partners:
NUP58
Nucleoporin p58/p45 isoform X1.
   
 0.999
NUP62CL
Nucleoporin 62 C-terminal like.
   
 0.996
NUP205
Nuclear pore complex protein Nup205.
   
 0.992
NUP98
Nuclear pore complex protein Nup98-Nup96-like.
   
 0.985
NUP85
Nucleoporin 85.
   
 0.980
NUP93
Nuclear pore complex protein Nup93 isoform X1.
   
 0.980
NUP107
Nuclear pore complex protein Nup107.
   
 0.980
NUP155
Nuclear pore complex protein Nup155 isoform X1.
   
 0.980
NUP188
Nuclear pore complex protein Nup188.
    
 0.978
NUP153
Nuclear pore complex protein Nup153 isoform X3.
   
 0.972
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.