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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUGP1SURP and G-patch domain-containing protein 1. (191 aa)    
Predicted Functional Partners:
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43.
   
 0.988
RBM17
Splicing factor 45 isoform X1.
   
 
 0.942
LOC107199522
Splicing factor U2AF 65 kDa subunit-like.
    
 
 0.929
LOC107199529
Splicing factor U2AF 65 kDa subunit-like.
    
 
 0.833
RBM6
RNA-binding protein 6 isoform X1.
   
 0.740
RBM5
RNA-binding protein 5/10.
   
 0.740
RBM25
RNA binding motif protein 25.
   
 
 0.699
DHX9
ATP-dependent RNA helicase A isoform X1.
    
  0.658
SRRM3
Serine/arginine repetitive matrix protein 3.
   
 
 0.642
RBM39
RNA-binding protein 39 isoform X1.
   
  0.638
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.