STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM39RNA-binding protein 39 isoform X1. (522 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5-like protein.
   
 
 0.972
LOC107199522
Splicing factor U2AF 65 kDa subunit-like.
   
 
 0.903
RBM25
RNA binding motif protein 25.
   
 0.890
DDX5
Probable ATP-dependent RNA helicase DDX5 isoform X1.
   
 0.864
LUC7L3
Luc7-like protein 3 isoform X1.
   
 0.846
BANF1
Barrier-to-autointegration factor-like.
   
 0.821
DDB1
DNA damage-binding protein 1.
    
 
 0.781
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 
 0.764
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
  0.762
DDA1
DET1 and DDB1 associated 1.
    
 
 0.755
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.