Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MAGOHMago homolog, exon junction complex subunit. (187 aa)    
Predicted Functional Partners:
RBM8A
RNA-binding protein 8A.
   
 0.997
EIF4A3
Eukaryotic initiation factor 4A-III.
   
 0.990
CASC3
Protein CASC3.
    
 0.976
ALYREF
THO complex subunit 4.
   
 0.975
PNN
Pinin.
   
 0.973
SAP18
Histone deacetylase complex subunit SAP18.
   
 0.970
SRSF3
Splicing factor, arginine/serine-rich 3.
   
 0.964
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
 0.961
UPF2
Regulator of nonsense transcripts 2.
    
 0.957
SRSF1
Splicing factor, arginine/serine-rich 1.
   
 0.954
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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