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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB6ARas-related protein Rab-6A isoform X1. (208 aa)    
Predicted Functional Partners:
GDI2
Rab GDP dissociation inhibitor beta.
   
 0.938
RIC1
RAB6A-GEF complex partner protein 1 isoform X1.
    
 0.863
ARL1
ADP-ribosylation factor-like protein 1.
   
 0.855
GCC2
GRIP and coiled-coil domain-containing protein 2.
    
 0.810
VPS53
Vacuolar protein sorting-associated protein 53 homolog isoform X1.
    
 0.806
COG6
Conserved oligomeric Golgi complex subunit 6 isoform X1.
   
 0.775
STX6
Syntaxin 6.
    
 0.769
ENSPMJP00000002489
annotation not available
    
 0.767
RGP1
RAB6A-GEF complex partner protein 2.
    
 0.766
STX16
Syntaxin 16.
    
 0.765
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.