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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YIPF1Protein YIPF1 isoform X1. (306 aa)    
Predicted Functional Partners:
YIPF4
Protein YIPF4.
   
 
 0.777
YIPF6
Protein YIPF6.
   
 
 0.695
YIPF7
Protein YIPF5/7.
   
 
 0.691
YIPF3
Protein YIPF3.
   
  
 0.683
LOC107199556
Protein YIF1B-like.
   
  
 0.652
TVP23A
Golgi apparatus membrane protein TVP23 homolog A.
   
 
 0.614
LOC107212242
Golgi apparatus membrane protein TVP23 homolog B-like isoform X1.
   
 
 0.614
YIPF5
Protein YIPF5 isoform X1.
   
 
 0.559
SELENOS
Selenoprotein S.
   
 
 0.557
SLC38A7
Solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8.
      
 0.532
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.