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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM8ARNA-binding protein 8A. (174 aa)    
Predicted Functional Partners:
MAGOH
Mago homolog, exon junction complex subunit.
   
 0.999
EIF4A3
Eukaryotic initiation factor 4A-III.
   
 0.999
CASC3
Protein CASC3.
   
 0.999
UPF2
Regulator of nonsense transcripts 2.
    
 0.988
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
0.984
SRSF3
Splicing factor, arginine/serine-rich 3.
   
 0.977
UPF1
UPF1 RNA helicase and ATPase.
    
 0.975
SRSF1
Splicing factor, arginine/serine-rich 1.
   
 0.973
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
 0.951
ALYREF
THO complex subunit 4.
   
 0.944
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.