Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107215657Keratin, type II cytoskeletal 4-like. (554 aa)    
Predicted Functional Partners:
LOC107200651
Desmoglein-1-gamma-like.
   
 
 0.806
DSG2
Desmoglein 2.
   
 
 0.806
UNC79
Protein unc-79 homolog isoform X1.
    
 0.622
ACTR5
LOW QUALITY PROTEIN: actin-related protein 5.
    
 0.535
INO80D
INO80 complex subunit D.
    
 0.526
INO80C
INO80 complex subunit C.
    
 0.515
NFRKB
Nuclear factor related to kappa-B-binding protein isoform X1.
    
 0.499
ACTR8
Actin-related protein 8.
    
  0.498
RUVBL1
RuvB-like protein 1 (pontin 52).
    
  0.492
LOC107215667
Keratin, type II cytoskeletal 8.
   
  0.454
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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