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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR4E3 ubiquitin-protein ligase UBR4. (5111 aa)    
Predicted Functional Partners:
KCMF1
E3 ubiquitin-protein ligase KCMF1 isoform X1.
    
 
 0.907
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.633
CALML4
Calmodulin-like protein 4.
    
 
 0.572
ATG7
Ubiquitin-like modifier-activating enzyme ATG7 isoform X5.
   
 
 0.569
UBA3
NEDD8-activating enzyme E1 catalytic subunit isoform X1.
   
 
 0.569
UBA5
Ubiquitin-like modifier-activating enzyme 5 isoform X1.
   
 
 0.569
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X1.
      
 0.537
MRTO4
MRNA turnover protein 4 homolog.
      
 0.533
ATE1
Arginyl-tRNA--protein transferase 1 isoform X1.
      
 0.533
APEX1
DNA-(apurinic or apyrimidinic site) lyase.
      
 0.533
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.