Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM107BProtein FAM107B. (132 aa)    
Predicted Functional Partners:
OSTN
Osteocrin isoform X1.
    
 
 0.698
PCNP
PEST proteolytic signal-containing nuclear protein.
    
   0.632
ARHGEF3
Rho guanine nucleotide exchange factor 3 isoform X1.
    
 0.555
LHFPL2
Lipoma HMGIC fusion partner-like 2 protein.
      
 0.541
NOVA1
RNA-binding protein Nova-1 isoform X1.
      
 0.505
NEO1
Neogenin isoform X1.
    
 0.489
MST1R
Macrophage-stimulating protein receptor.
   
  0.479
MET
Hepatocyte growth factor receptor isoform X1.
   
  0.479
NET1
Neuroepithelial cell-transforming gene 1 protein isoform X1.
    
 0.440
GPHN
Gephyrin.
      
 0.423
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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