Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LAMP3Lysosome-associated membrane glycoprotein 3. (428 aa)    
Predicted Functional Partners:
LAMP2
Lysosome-associated membrane glycoprotein 2 isoform X1.
     
0.902
ABCA3
ATP-binding cassette, subfamily A (ABC1), member 3.
   
 
 0.574
C5
Complement C5.
   
  
 0.530
SFTPC
Pulmonary surfactant-associated protein C.
   
  
 0.435
RPTOR
Regulatory associated protein of MTOR complex 1.
    
 
 0.433
CD83
CD83 antigen.
   
  
 0.433
SEC13
Protein transport protein SEC13.
    
 
 0.415
NPRL2
NPR2 like, GATOR1 complex subunit.
    
 
 0.414
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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