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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSF1Remodeling and spacing factor 1 isoform X1. (1635 aa)    
Predicted Functional Partners:
SMARCA5
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
   
 0.847
SMARCA1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1.
   
 0.847
ARID4B
AT-rich interactive domain-containing protein 4B isoform X2.
   
    0.585
BPTF
Bromodomain PHD finger transcription factor.
   
  
 0.542
NIPBL
Cohesin loading factor subunit SCC2.
   
 
 0.533
USP53
Inactive ubiquitin carboxyl-terminal hydrolase 53.
      
 0.530
ATRX
Transcriptional regulator ATRX isoform X1.
   
  0.514
CENPI
Centromere protein I isoform X1.
    
 0.484
CENPN
Centromere protein N.
    
 0.460
BRD7
Bromodomain-containing protein 7.
  
   
 0.451
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.