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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGBD5PiggyBac transposable element-derived protein 5. (445 aa)    
Predicted Functional Partners:
CD3E
CD3e molecule.
   
 0.738
CD247
LOW QUALITY PROTEIN: T-cell surface glycoprotein CD3 zeta chain.
   
 0.633
RAG1
V(D)J recombination-activating protein 1.
    
 
 0.583
QRICH1
Glutamine-rich protein 1.
   
 
 0.562
SAMD11
Sterile alpha motif domain-containing protein 11 isoform X1.
    
 
 0.561
LOC107210432
[histone H3]-lysine36 N-dimethyltransferase SETMAR.
    
 
 0.556
RBM33
RNA-binding protein 33.
   
 
 0.544
FAM83C
Protein FAM83C.
      
 0.539
LOC107199101
Putative nuclease HARBI1.
   
  
 0.534
OXSM
3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial.
  
 0.509
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.