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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107199243Zinc finger protein 638-like isoform X1. (932 aa)    
Predicted Functional Partners:
ENSPMJP00000025069
annotation not available
   
 0.577
NIPBL
Cohesin loading factor subunit SCC2.
   
 0.535
LOC107199213
Zinc finger protein 638-like isoform X2.
 
     0.508
ARID4B
AT-rich interactive domain-containing protein 4B isoform X2.
   
 0.503
U2SURP
U2 snRNP-associated SURP motif-containing protein isoform X1.
   
    0.497
SENP6
Sentrin-specific protease 6 isoform X1.
   
   0.461
ZNF644
Zinc finger protein 644.
   
 0.434
BCLAF1
Bcl-2-associated transcription factor 1 isoform X1.
   
 0.416
RSF1
Remodeling and spacing factor 1 isoform X1.
   
  0.407
MYSM1
Histone H2A deubiquitinase MYSM1 isoform X1.
   
 0.406
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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