Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM7Tripartite motif-containing protein 7. (530 aa)    
Predicted Functional Partners:
GYG2
Glycogenin-2.
    
 
 0.843
GYG1
Glycogenin-1 isoform X1.
    
 
 0.843
MRPS31
28S ribosomal protein S31, mitochondrial.
    
  0.638
PTEN
Phosphatase and tensin homolog.
    
  0.638
TRAT1
T-cell receptor-associated transmembrane adapter 1 isoform X1.
      
 0.635
TUBGCP4
Gamma-tubulin complex component 4 isoform X1.
    
 0.617
ZNF608
Zinc finger protein 608 isoform X1.
    
 
 0.614
UBE2D1
Ubiquitin-conjugating enzyme E2 D1 isoform X1.
    
 0.613
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
    
 0.613
LOC107209957
Protein BEAN1-like isoform X1.
      
 0.600
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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