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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCB10ATP-binding cassette sub-family B member 10, mitochondrial. (564 aa)    
Predicted Functional Partners:
FECH
Protoporphyrin/coproporphyrin ferrochelatase.
   
  
 0.686
ABCB7
ATP-binding cassette sub-family B member 7, mitochondrial.
    
0.652
TDG
G/T mismatch-specific thymine DNA glycosylase isoform X1.
      
 0.645
E2F6
Transcription factor E2F6 isoform X1.
      
 0.633
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2 isoform X1.
  
 0.535
STEAP3
Metalloreductase STEAP3.
      
 0.533
NEB
Nebulin.
    
 
 0.520
CDH12
Cadherin 12, type 2, N-cadherin 2.
    
 
 0.470
ABCF3
ATP-binding cassette, subfamily F, member 3.
  
 
 0.468
UBFD1
Ubiquitin domain-containing protein UBFD1.
    
 0.445
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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