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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107204321Putative RNA-binding protein Luc7-like 2 isoform X1. (404 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.955
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 
 0.908
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
    
 
 0.900
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.869
SNRPD1
Small nuclear ribonucleoprotein Sm D1.
    
 
 0.839
SF3B3
Splicing factor 3B subunit 3.
    
 0.836
SNRPE
Small nuclear ribonucleoprotein E isoform X1.
   
 
 0.832
SNRPF
Small nuclear ribonucleoprotein F.
   
 
 0.826
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 
 0.801
PRPF39
Pre-mRNA-processing factor 39 isoform X1.
   
 
 0.790
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.