Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHISA8Putative protein shisa-8. (238 aa)    
Predicted Functional Partners:
SNTN
Sentan.
      
 0.663
SHISA3
Protein shisa-3 homolog.
      
 0.622
MEOX1
Homeobox protein MOX-1.
      
 0.538
MCIDAS
Multiciliate differentiation and DNA synthesis associated cell cycle protein.
      
 0.510
CFAP53
Cilia- and flagella-associated protein 53 isoform X1.
      
 0.453
DEUP1
Deuterosome protein 1 isoform X1.
      
 0.434
SHISA6
Protein shisa-6 homolog.
 
      0.419
C2CD2
C2 domain-containing protein 2.
      
 0.416
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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