STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
   
 0.999
ENSPMJP00000017931
LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 0.999
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.999
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.998
SNRPE
Small nuclear ribonucleoprotein E isoform X1.
   
 0.997
SNRPB
Small nuclear ribonucleoprotein-associated protein B.
   
 0.996
SNRPD1
Small nuclear ribonucleoprotein Sm D1.
   
 0.996
SNRPF
Small nuclear ribonucleoprotein F.
   
 0.996
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.995
DDX23
DEAD-box helicase 23.
   
 0.994
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.