Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
URI1Unconventional prefoldin RPB5 interactor 1. (451 aa)    
Predicted Functional Partners:
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 
 0.977
RUVBL1
RuvB-like protein 1 (pontin 52).
    
 
 0.963
RUVBL2
RuvB-like protein 2.
    
 
 0.961
PDRG1
P53 and DNA damage-regulated protein 1.
    
 
 0.959
WDR92
WD repeat-containing protein 92.
    
 
 0.952
RPAP3
RNA polymerase II-associated protein 3.
    
 
 0.947
PIH1D1
PIH1 domain-containing protein 1.
    
 
 0.947
POLR1D
DNA-directed RNA polymerases I and III subunit RPAC2-like.
    
   0.904
POLR3E
DNA-directed RNA polymerase III subunit RPC5.
    
   0.898
POLR3B
DNA-directed RNA polymerase III subunit RPC2.
   
   0.884
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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