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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM187AIg-like V-type domain-containing protein FAM187A. (424 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.561
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.500
ZFAND4
AN1-type zinc finger and ubiquitin domain-containing protein 1.
   
 0.487
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.485
LGR4
Leucine-rich repeat-containing G protein-coupled receptor 4.
    
 0.410
RXFP1
Relaxin family peptide receptor 1.
    
 0.410
LGR5
Leucine-rich repeat-containing G-protein coupled receptor 5 isoform X2.
    
 0.410
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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