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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAD23AUV excision repair protein RAD23 homolog A. (98 aa)    
Predicted Functional Partners:
MYSM1
Histone H2A deubiquitinase MYSM1 isoform X1.
   
 0.966
UBXN7
UBX domain-containing protein 7.
    
 0.963
XPC
DNA repair protein complementing XP-C cells isoform X1.
   
 0.962
NGLY1
Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase isoform X1.
    
 0.959
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.934
ENSPMJP00000027002
Ubiquitin.
    
 0.931
PSMD2
26S proteasome non-ATPase regulatory subunit 2.
    
 0.925
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.923
ZFAND4
AN1-type zinc finger and ubiquitin domain-containing protein 1.
    
 0.920
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.909
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.