Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD51DNA repair protein RAD51 homolog 1. (339 aa)    
Predicted Functional Partners:
BRCA2
Breast cancer type 2 susceptibility protein isoform X1.
   
 0.998
BRCA1
Breast cancer type 1 susceptibility protein isoform X1.
   
 0.980
RAD52
DNA repair protein RAD52 homolog isoform X1.
    
 0.975
PALB2
Partner and localizer of BRCA2 isoform X1.
  
 0.973
BLM
BLM RecQ like helicase.
  
 0.972
XRCC3
DNA repair protein XRCC3 isoform X1.
    
 0.971
BARD1
BRCA1-associated RING domain protein 1 isoform X1.
   
 0.968
RAD51AP1
RAD51-associated protein 1 isoform X1.
   
 0.967
RPA1
Replication protein A 70 kDa DNA-binding subunit.
  
 0.961
ATRX
Transcriptional regulator ATRX isoform X1.
   
 0.950
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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