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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHM1Pleckstrin homology domain-containing family M member 1 isoform X1. (1031 aa)    
Predicted Functional Partners:
MAP1LC3C
Microtubule-associated proteins 1A/1B light chain 3C.
    
 
 0.739
VPS11
Vacuolar protein sorting-associated protein 11 homolog isoform X1.
    
 
 0.629
SNAP29
Synaptosomal-associated protein 29.
      
 0.614
GABARAPL2
Gamma-aminobutyric acid receptor-associated protein-like 2.
    
 
 0.590
VPS18
Vacuolar protein sorting-associated protein 18 homolog.
   
 
 0.560
STX17
Syntaxin 17.
      
 0.538
OSTM1
Osteopetrosis-associated transmembrane protein 1 (chloride channel 7 beta subunit).
      
 0.538
CLCN7
H(+)/Cl(-) exchange transporter 7.
      
 0.533
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
    
 
 0.509
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X1.
    
 
 0.508
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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