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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR48WD repeat-containing protein 48. (677 aa)    
Predicted Functional Partners:
USP1
Ubiquitin carboxyl-terminal hydrolase 1.
    
 0.999
FANCL
E3 ubiquitin-protein ligase FANCL.
     
 0.964
FANCI
Fanconi anemia group I protein isoform X1.
    
 0.959
ENSPMJP00000027002
Ubiquitin.
    
 0.938
DMWD
Dystrophia myotonica WD repeat-containing protein.
    
 0.924
WDR20
WD repeat-containing protein 20 isoform X1.
    
 0.924
USP46
Ubiquitin carboxyl-terminal hydrolase 12/46.
   
 0.908
LOC107203939
Ubiquitin carboxyl-terminal hydrolase 12-like isoform X1.
   
 0.893
USP12
Ubiquitin carboxyl-terminal hydrolase 12/46.
   
 0.893
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.888
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.