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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATXN2Ataxin-2 isoform X6. (993 aa)    
Predicted Functional Partners:
LSM12
Protein LSM12 homolog.
    
 
 0.993
SNRPB
Small nuclear ribonucleoprotein-associated protein B.
    
 
 0.945
DDX6
DEAD-box helicase 6.
    
 
 0.945
TRNAU1AP
TRNA selenocysteine 1-associated protein 1 isoform X1.
    
 
 0.874
PABPC4
Polyadenylate-binding protein 4 isoform X1.
   
 
 0.762
PABPC1L
Polyadenylate-binding protein 1-like isoform X2.
   
 
 0.762
PABPC1
Polyadenylate-binding protein 1.
   
 
 0.762
DNAJC6
Putative tyrosine-protein phosphatase auxilin isoform X1.
  
  
 0.744
IMPACT
Protein IMPACT isoform X1.
    
 
 0.733
NCL
Nucleolin.
   
 
 0.721
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.