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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107199522Splicing factor U2AF 65 kDa subunit-like. (344 aa)    
Predicted Functional Partners:
U2AF1
Splicing factor U2AF 35 kDa subunit isoform X1.
   
 0.992
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 
 0.972
SF3B3
Splicing factor 3B subunit 3.
   
 0.966
SRSF1
Splicing factor, arginine/serine-rich 1.
   
 0.963
SF3B4
Splicing factor 3B subunit 4.
   
 
 0.960
PHF5A
PHD finger-like domain-containing protein 5A.
   
 
 0.950
SF3B5
Splicing factor 3B subunit 5.
   
 
 0.948
SF3B6
Pre-mRNA branch site protein p14.
   
 
 0.948
SRSF3
Splicing factor, arginine/serine-rich 3.
   
 0.943
ZRSR2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
   
 0.937
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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