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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107201059LOW QUALITY PROTEIN: sodium channel protein type 5 subunit alpha-like. (1964 aa)    
Predicted Functional Partners:
UNC79
Protein unc-79 homolog isoform X1.
   
 0.983
SCN2B
Voltage-gated sodium channel type II beta.
   
 0.658
WDR35
WD repeat-containing protein 35 isoform X1.
    
 0.592
IFT122
Intraflagellar transport protein 122 homolog isoform X1.
   
 0.580
IFT140
Intraflagellar transport protein 140 homolog isoform X2.
    
 0.560
WDR19
WD repeat-containing protein 19.
    
 0.553
CACNB4
Voltage-dependent L-type calcium channel subunit beta-4 isoform X1.
   
 0.453
CACNB3
Calcium voltage-gated channel auxiliary subunit beta 3.
   
 0.453
CACNB2
Voltage-dependent L-type calcium channel subunit beta-2 isoform X1.
   
 0.453
CACNB1
Calcium voltage-gated channel auxiliary subunit beta 1.
   
 0.453
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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