STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMG20BHigh mobility group 20B. (317 aa)    
Predicted Functional Partners:
KDM1A
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
   
 0.949
PHF21A
PHD finger protein 21A isoform X1.
    
 0.943
RCOR1
REST corepressor 1.
   
 0.941
RCOR3
REST corepressor 3 isoform X1.
   
 0.868
HMG20A
High mobility group protein 20A.
  
 
 
0.727
ZNF217
Zinc finger protein 217.
    
 0.669
HDAC1
Histone deacetylase 1/2.
   
 0.648
HDAC8
Histone deacetylase 8 isoform X1.
   
 0.648
HDAC2
Histone deacetylase 1/2.
   
 0.648
POLRMT
DNA-directed RNA polymerase, mitochondrial isoform X1.
    
 0.611
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.