Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CABP2Calcium binding protein 2. (292 aa)    
Predicted Functional Partners:
NPHP3
Nephrocystin-3.
    
 0.749
AK9
Adenylate kinase 9.
    
 
 0.732
ARL3
ADP-ribosylation factor-like protein 3.
   
 0.697
UNC119
Protein unc-119 homolog A.
   
   0.590
PRIMA1
Proline-rich membrane anchor 1.
      
 0.552
OTOL1
Otolin-1.
      
 0.537
RP2
Protein XRP2 isoform X1.
     
  0.537
CIB1
Calcium and integrin-binding protein 1.
    
 0.531
PDZK1IP1
PDZK1 interacting protein 1.
      
 0.506
WDR90
Mitochondrial Rho GTPase 2.
   
 0.495
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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