DCAF12 protein (Parus major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DCAF12

DDB1- and CUL4-associated factor 12. (403 aa)

Predicted Functional Partners:

DDB1

0.938

CCT5

0.805

DCAF4

0.655

DCAF6

0.631

WDR37

0.546

DIP2C

0.533

STRADA

0.500

STRADB

0.500

ADIPOR1

0.464

DDB2

0.449

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADIPOR1	DCAF12	ENSPMJP00000005284	ENSPMJP00000006035	Adiponectin receptor protein 1.	DDB1- and CUL4-associated factor 12.	0.464
CCT5	DCAF12	ENSPMJP00000007616	ENSPMJP00000006035	T-complex protein 1 subunit epsilon.	DDB1- and CUL4-associated factor 12.	0.805
CCT5	DDB1	ENSPMJP00000007616	ENSPMJP00000008394	T-complex protein 1 subunit epsilon.	DNA damage-binding protein 1.	0.530
DCAF12	ADIPOR1	ENSPMJP00000006035	ENSPMJP00000005284	DDB1- and CUL4-associated factor 12.	Adiponectin receptor protein 1.	0.464
DCAF12	CCT5	ENSPMJP00000006035	ENSPMJP00000007616	DDB1- and CUL4-associated factor 12.	T-complex protein 1 subunit epsilon.	0.805
DCAF12	DCAF4	ENSPMJP00000006035	ENSPMJP00000020092	DDB1- and CUL4-associated factor 12.	DDB1- and CUL4-associated factor 4 isoform X1.	0.655
DCAF12	DCAF6	ENSPMJP00000006035	ENSPMJP00000016198	DDB1- and CUL4-associated factor 12.	DDB1- and CUL4-associated factor 6 isoform X1.	0.631
DCAF12	DDB1	ENSPMJP00000006035	ENSPMJP00000008394	DDB1- and CUL4-associated factor 12.	DNA damage-binding protein 1.	0.938
DCAF12	DDB2	ENSPMJP00000006035	ENSPMJP00000016239	DDB1- and CUL4-associated factor 12.	DNA damage-binding protein 2 isoform X1.	0.449
DCAF12	DIP2C	ENSPMJP00000006035	ENSPMJP00000006570	DDB1- and CUL4-associated factor 12.	Disco-interacting protein 2 homolog C isoform X1.	0.533
DCAF12	STRADA	ENSPMJP00000006035	ENSPMJP00000023999	DDB1- and CUL4-associated factor 12.	STE20-related kinase adapter protein alpha isoform X1.	0.500
DCAF12	STRADB	ENSPMJP00000006035	ENSPMJP00000024790	DDB1- and CUL4-associated factor 12.	STE20-related kinase adapter protein beta isoform X1.	0.500
DCAF12	WDR37	ENSPMJP00000006035	ENSPMJP00000006615	DDB1- and CUL4-associated factor 12.	WD repeat-containing protein 37.	0.546
DCAF4	DCAF12	ENSPMJP00000020092	ENSPMJP00000006035	DDB1- and CUL4-associated factor 4 isoform X1.	DDB1- and CUL4-associated factor 12.	0.655
DCAF4	DCAF6	ENSPMJP00000020092	ENSPMJP00000016198	DDB1- and CUL4-associated factor 4 isoform X1.	DDB1- and CUL4-associated factor 6 isoform X1.	0.846
DCAF4	DDB1	ENSPMJP00000020092	ENSPMJP00000008394	DDB1- and CUL4-associated factor 4 isoform X1.	DNA damage-binding protein 1.	0.957
DCAF4	DDB2	ENSPMJP00000020092	ENSPMJP00000016239	DDB1- and CUL4-associated factor 4 isoform X1.	DNA damage-binding protein 2 isoform X1.	0.780
DCAF6	DCAF12	ENSPMJP00000016198	ENSPMJP00000006035	DDB1- and CUL4-associated factor 6 isoform X1.	DDB1- and CUL4-associated factor 12.	0.631
DCAF6	DCAF4	ENSPMJP00000016198	ENSPMJP00000020092	DDB1- and CUL4-associated factor 6 isoform X1.	DDB1- and CUL4-associated factor 4 isoform X1.	0.846
DCAF6	DDB1	ENSPMJP00000016198	ENSPMJP00000008394	DDB1- and CUL4-associated factor 6 isoform X1.	DNA damage-binding protein 1.	0.962