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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHIPPH-interacting protein isoform X1. (1813 aa)    
Predicted Functional Partners:
MYSM1
Histone H2A deubiquitinase MYSM1 isoform X1.
   
 0.660
RANBP2
E3 SUMO-protein ligase RanBP2 isoform X1.
   
 0.612
MAD2L1
Mitotic spindle assembly checkpoint protein MAD2A.
   
 0.594
TAF1
Transcription initiation factor TFIID subunit 1 isoform X1.
   
0.582
TEX10
Testis-expressed sequence 10 protein isoform X1.
   
 0.572
TAF12
Transcription initiation factor TFIID subunit 12.
   
 0.571
TAF2
Transcription initiation factor TFIID subunit 2 isoform X1.
   
 0.571
TAF9
Transcription initiation factor TFIID subunit 9B.
    
 0.568
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.567
TAF7
Transcription initiation factor TFIID subunit 7-like.
    
 0.552
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.