Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBISRibosomal biogenesis factor. (94 aa)    
Predicted Functional Partners:
PES1
Pescadillo homolog.
      
 0.685
NOB1
NIN1 (RPN12) binding protein 1 homolog.
      
 0.650
DCPS
M7GpppX diphosphatase.
      
 0.598
WDR18
Pre-rRNA-processing protein IPI3.
      
 0.593
LSM12
Protein LSM12 homolog.
   
  
 0.564
DIMT1
18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase.
   
  
 0.552
MAK16
Protein MAK16 homolog.
   
  
 0.552
FAM174C
Family with sequence similarity 174 member C.
      
 0.551
BYSL
Essential nuclear protein 1.
      
 0.542
LRRCC1
Leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X1.
      
 0.536
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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