Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SHQ1Protein SHQ1 homolog isoform X1. (605 aa)    
Predicted Functional Partners:
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.998
GAR1
H/ACA ribonucleoprotein complex subunit 1.
   
 
 0.956
TRUB1
Probable tRNA pseudouridine synthase 1 isoform X1.
   
 0.912
RUVBL1
RuvB-like protein 1 (pontin 52).
   
 
 0.869
RUVBL2
RuvB-like protein 2.
    
 
 0.865
NHP2
H/ACA ribonucleoprotein complex subunit 2.
   
 
 0.845
NAF1
H/ACA ribonucleoprotein complex non-core subunit NAF1.
   
 
 0.780
TRUB2
Mitochondrial mRNA pseudouridine synthase TRUB2.
   
 0.693
FCHSD2
F-BAR and double SH3 domains protein 2 isoform X1.
      
 0.684
GXYLT2
UDP-xylose:glucoside alpha-1,3-xylosyltransferase.
      
 0.680
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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