Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SMPD1Sphingomyelin phosphodiesterase. (642 aa)    
Predicted Functional Partners:
SMPD2
Sphingomyelin phosphodiesterase 2 isoform X1.
     
 0.976
SMPD3
Sphingomyelin phosphodiesterase 3.
     
 0.967
SGMS2
Phosphatidylcholine:ceramide cholinephosphotransferase 2.
     
 0.960
SGMS1
Phosphatidylcholine:ceramide cholinephosphotransferase 1.
     
 0.960
SMPD4
Sphingomyelin phosphodiesterase 4 isoform X1.
     
 0.958
GALC
Galactocerebrosidase isoform X1.
     
 0.951
DEGS2
Sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X1.
     
 0.946
UGCG
Ceramide glucosyltransferase.
     
 0.945
CERK
Ceramide kinase.
    
 0.943
DEGS1
Sphingolipid 4-desaturase/C4-monooxygenase.
     
 0.937
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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