STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH17Cadherin 17, LI cadherin. (833 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1 isoform X1.
    
 0.873
VCL
Vinculin.
    
 0.736
JUP
Junction plakoglobin.
    
 0.694
ENSPMJP00000024063
annotation not available
    
 0.684
NECTIN1
Poliovirus receptor-related protein 1.
   
 0.679
PRKAA1
5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1.
   
  
 0.679
TIMP2
LOW QUALITY PROTEIN: metalloproteinase inhibitor 2.
   
  
 0.635
CTNND1
Catenin (cadherin-associated protein), delta 1.
    
 0.621
ARVCF
Armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1.
    
 0.621
ENSPMJP00000018957
annotation not available
    
 0.621
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.