Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107208889Schwannomin-interacting protein 1 isoform X1. (341 aa)    
Predicted Functional Partners:
SCOC
Short coiled-coil protein isoform X1.
    
   0.699
ZFAND5
AN1-type zinc finger protein 5.
      
 0.629
LOC107215610
AN1-type zinc finger protein 5-like.
      
 0.629
PIP5K1C
Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform X1.
      
 0.625
GPM6A
Neuronal membrane glycoprotein M6-a.
   
  
 0.614
HEATR5A
HEAT repeat-containing protein 5A isoform X1.
      
 0.551
MLF1
Myeloid leukemia factor 1 isoform X1.
      
 0.542
POP4
Ribonuclease P protein subunit p29 isoform X1.
      
 0.537
LRRC34
Leucine-rich repeat-containing protein 34.
      
 0.536
TOX2
TOX high mobility group box family member 2.
      
 0.512
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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