Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC107198963Class II histocompatibility antigen, B-L beta chain-like isoform X1. (326 aa)    
Predicted Functional Partners:
CD74
HLA class II histocompatibility antigen gamma chain isoform X1.
   
 0.987
CD4
T-cell surface glycoprotein CD4 isoform X1.
   
 0.948
ENSPMJP00000004385
annotation not available
   
  0.919
ENSPMJP00000004267
Class II histocompatibility antigen, B-L beta chain-like.
  
  
 
0.904
HLA-DRA
HLA class II histocompatibility antigen, DR alpha chain.
     
 
0.900
LAG3
Lymphocyte activation gene 3 protein.
    
 0.716
INS
Insulin.
    
 
 0.686
RPS14
Small subunit ribosomal protein S14e.
   
 0.674
AP2M1
AP-2 complex subunit mu isoform X1.
     
  0.515
LGMN
Legumain.
     
 0.495
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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