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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBAC1Ubiquitin-associated domain-containing protein 1 isoform X1. (408 aa)    
Predicted Functional Partners:
RNF123
Kip1 ubiquitination-promoting complex protein 1.
   
 
 0.885
UBL7
Ubiquitin like 7.
    
 0.548
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.545
IMPG2
Interphotoreceptor matrix proteoglycan 2.
      
 0.533
H6PD
GDH/6PGL endoplasmic bifunctional protein.
      
 0.526
CAMSAP1
Calmodulin-regulated spectrin-associated protein 1 isoform X1.
 
    
 0.513
PMPCA
Mitochondrial-processing peptidase subunit alpha.
   
  
 0.480
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.472
DES
Desmin.
      
 0.465
SURF6
Surfeit 6.
      
 0.457
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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