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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1Transcription elongation regulator 1 isoform X1. (987 aa)    
Predicted Functional Partners:
MFAP1
Microfibrillar-associated protein 1.
   
 0.953
PRPF38A
Pre-mRNA-splicing factor 38A.
   
 0.942
ZMAT2
U4/U6.U5 tri-snRNP component SNU23.
    
  0.925
DDX46
Probable ATP-dependent RNA helicase DDX46.
   
 0.900
SRRM1
Serine/arginine repetitive matrix protein 1 isoform X1.
   
 0.897
SF3B4
Splicing factor 3B subunit 4.
    
 
 0.873
RBM22
Pre-mRNA-splicing factor RBM22 isoform X1.
   
 0.861
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 
 0.860
SNW1
SNW domain containing 1.
   
 0.859
CDC5L
Cell division cycle 5-like protein.
   
  0.854
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.