Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRMT9BProbable tRNA methyltransferase 9-like protein isoform X2. (455 aa)    
Predicted Functional Partners:
TRMT112
tRNA methyltransferase subunit 11-2.
   
 0.936
SUPT20H
Transcription factor SPT20 homolog isoform X1.
    
 
 0.700
DDX27
Probable ATP-dependent RNA helicase DDX27.
   
 0.697
GPR141
Probable G-protein coupled receptor 141 isoform X1.
      
 0.697
LOC107213418
Somatomedin-B and thrombospondin type-1 domain-containing protein-like.
      
 0.696
C4AH8orf48
Uncharacterized protein C8orf48 homolog.
      
 0.695
ZNF326
DBIRD complex subunit ZNF326 isoform X1.
      
 0.687
EPDR1
Mammalian ependymin-related protein 1.
      
 0.686
KCNK18
Potassium channel subfamily K member 18 isoform X1.
      
 0.682
LONRF1
LON peptidase N-terminal domain and RING finger protein 1.
   
  
 0.677
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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