Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LYSMD3LysM and putative peptidoglycan-binding domain-containing protein 3. (294 aa)    
Predicted Functional Partners:
FIBCD1
Fibrinogen C domain-containing protein 1.
      
 0.836
PCDH18
Protocadherin-18 isoform X1.
      
 0.573
LYSMD2
LysM and putative peptidoglycan-binding domain-containing protein 2.
      
 0.572
ARL6IP1
ADP-ribosylation factor-like protein 6-interacting protein 1 isoform X1.
      
 0.535
PAN3
poly(A) specific ribonuclease subunit PAN3.
      
 0.524
ARRDC3
Arrestin domain-containing protein 3.
      
 0.521
RPS15A
Small subunit ribosomal protein S15Ae.
      
 0.429
MBLAC2
Metallo-beta-lactamase domain-containing protein 2.
      
 0.422
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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