close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM27RNA binding motif protein 27. (1025 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1 domain-containing protein isoform X1.
   
 
 0.633
PABPN1L
Embryonic polyadenylate-binding protein 2.
    
 
 0.593
MTREX
Superkiller viralicidic activity 2-like 2 isoform X1.
   
 
 0.484
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
    
 
 0.478
CLUH
Clustered mitochondria protein homolog.
   
  
 0.472
DELE1
DAP3 binding cell death enhancer 1.
      
 0.469
TCERG1
Transcription elongation regulator 1 isoform X1.
   
  
 0.416
RC3H2
RING finger and CCCH-type zinc finger domain-containing protein.
   
 
 0.408
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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