STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP40Ubiquitin carboxyl-terminal hydrolase 40 isoform X1. (1242 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.911
ENSPMJP00000027002
Ubiquitin.
   
 0.852
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
   
 0.850
GMPS
GMP synthase (glutamine-hydrolysing).
   
 
 0.804
UVSSA
UV-stimulated scaffold protein A.
    
 0.803
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.772
MRPS31
28S ribosomal protein S31, mitochondrial.
   
 0.694
PTEN
Phosphatase and tensin homolog.
   
 0.694
COQ9
Ubiquinone biosynthesis protein COQ9, mitochondrial.
      
 0.690
HID1
Protein HID1.
    
 
 0.648
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.