YBEY protein (Parus major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YBEY

Putative ribonuclease. (210 aa)

Predicted Functional Partners:

SOD2

0.945

ERAL1

0.894

TSTD3

0.889

RPS11

0.888

DAP3

0.885

MRPL17

0.880

MRPL21

0.852

TRIT1

0.822

MRPL46

0.815

MRPL47

0.815

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAP3	ERAL1	ENSPMJP00000012458	ENSPMJP00000026086	28S ribosomal protein S29, mitochondrial.	GTPase Era, mitochondrial isoform X1.	0.983
DAP3	MRPL17	ENSPMJP00000012458	ENSPMJP00000021227	28S ribosomal protein S29, mitochondrial.	39S ribosomal protein L17, mitochondrial.	0.985
DAP3	MRPL21	ENSPMJP00000012458	ENSPMJP00000008116	28S ribosomal protein S29, mitochondrial.	39S ribosomal protein L21, mitochondrial.	0.983
DAP3	MRPL46	ENSPMJP00000012458	ENSPMJP00000001625	28S ribosomal protein S29, mitochondrial.	39S ribosomal protein L46, mitochondrial.	0.986
DAP3	MRPL47	ENSPMJP00000012458	ENSPMJP00000002960	28S ribosomal protein S29, mitochondrial.	39S ribosomal protein L47, mitochondrial isoform X1.	0.984
DAP3	RPS11	ENSPMJP00000012458	ENSPMJP00000006556	28S ribosomal protein S29, mitochondrial.	Small subunit ribosomal protein S11e.	0.983
DAP3	SOD2	ENSPMJP00000012458	ENSPMJP00000012125	28S ribosomal protein S29, mitochondrial.	Superoxide dismutase [Mn], mitochondrial.	0.981
DAP3	TSTD3	ENSPMJP00000012458	ENSPMJP00000000954	28S ribosomal protein S29, mitochondrial.	Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3.	0.890
DAP3	YBEY	ENSPMJP00000012458	ENSPMJP00000007841	28S ribosomal protein S29, mitochondrial.	Putative ribonuclease.	0.885
ERAL1	DAP3	ENSPMJP00000026086	ENSPMJP00000012458	GTPase Era, mitochondrial isoform X1.	28S ribosomal protein S29, mitochondrial.	0.983
ERAL1	RPS11	ENSPMJP00000026086	ENSPMJP00000006556	GTPase Era, mitochondrial isoform X1.	Small subunit ribosomal protein S11e.	0.543
ERAL1	YBEY	ENSPMJP00000026086	ENSPMJP00000007841	GTPase Era, mitochondrial isoform X1.	Putative ribonuclease.	0.894
MRPL17	DAP3	ENSPMJP00000021227	ENSPMJP00000012458	39S ribosomal protein L17, mitochondrial.	28S ribosomal protein S29, mitochondrial.	0.985
MRPL17	MRPL21	ENSPMJP00000021227	ENSPMJP00000008116	39S ribosomal protein L17, mitochondrial.	39S ribosomal protein L21, mitochondrial.	0.999
MRPL17	MRPL46	ENSPMJP00000021227	ENSPMJP00000001625	39S ribosomal protein L17, mitochondrial.	39S ribosomal protein L46, mitochondrial.	0.988
MRPL17	MRPL47	ENSPMJP00000021227	ENSPMJP00000002960	39S ribosomal protein L17, mitochondrial.	39S ribosomal protein L47, mitochondrial isoform X1.	0.995
MRPL17	RPS11	ENSPMJP00000021227	ENSPMJP00000006556	39S ribosomal protein L17, mitochondrial.	Small subunit ribosomal protein S11e.	0.999
MRPL17	SOD2	ENSPMJP00000021227	ENSPMJP00000012125	39S ribosomal protein L17, mitochondrial.	Superoxide dismutase [Mn], mitochondrial.	0.969
MRPL17	TRIT1	ENSPMJP00000021227	ENSPMJP00000000974	39S ribosomal protein L17, mitochondrial.	TRNA dimethylallyltransferase, mitochondrial.	0.539
MRPL17	TSTD3	ENSPMJP00000021227	ENSPMJP00000000954	39S ribosomal protein L17, mitochondrial.	Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3.	0.837