Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1. (514 aa)    
Predicted Functional Partners:
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11 isoform X1.
   
 0.995
TSEN15
TRNA-splicing endonuclease subunit Sen15 isoform X1.
    
 0.980
TSEN54
TRNA-splicing endonuclease subunit Sen54 isoform X1.
    
 0.979
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.975
TSEN2
TRNA-splicing endonuclease subunit Sen2.
    
 0.973
CPSF3
LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3.
   
 0.953
CSTF2
Cleavage stimulation factor subunit 2 isoform X1.
   
 0.937
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.887
GTF3C3
General transcription factor 3C polypeptide 3 (transcription factor C subunit 4).
    
   0.843
FIP1L1
Pre-mRNA 3'-end-processing factor FIP1 isoform X1.
    
 0.834
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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