Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRAPPC3Trafficking protein particle complex subunit 3 isoform X1. (196 aa)    
Predicted Functional Partners:
TRAPPC5
Trafficking protein particle complex subunit 5.
   
 0.969
TRAPPC6B
Trafficking protein particle complex subunit 6B isoform X1.
   
 0.968
TRAPPC4
Trafficking protein particle complex subunit 4.
   
 0.960
TRAPPC2L
Trafficking protein particle complex subunit 2-like protein.
   
 0.955
TRAPPC2B
Trafficking protein particle complex subunit 2.
    
 0.947
TRAPPC12
Trafficking protein particle complex subunit 12 isoform X1.
    
 0.944
TRAPPC8
Trafficking protein particle complex subunit 8 isoform X1.
    
 0.943
TRAPPC11
Trafficking protein particle complex subunit 11.
    
 0.942
TRAPPC10
Trafficking protein particle complex subunit 10.
    
 0.931
TRAPPC9
Trafficking protein particle complex subunit 9 isoform X1.
    
 0.910
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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